IL_1KC8_095

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GAC*GCAC

Length

7 nucleotides

Bulged bases

1KC8|1|A|A|2902

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KC8_095 not in the Motif Atlas

Homologous match to IL_4V9F_097

Geometric discrepancy: 0.0392

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

1KC8|1|A|G|2855
1KC8|1|A|A|2856
1KC8|1|A|C|2857
*
1KC8|1|A|G|2900
1KC8|1|A|C|2901
1KC8|1|A|A|2902
1KC8|1|A|C|2903

Current chains

Chain A

23S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN L3

Chain Y

RIBOSOMAL PROTEIN L31E