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Motif IL_30722.1 Version IL_30722.1 of this group appears in releases 4.10 to 4.12

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-53-4
1 IL_8GLP_3148GLP0.52342L5 LSU rRNAOMC4456PSU4457C4458*G4520PSU4521G4524cWWcWwcWW
2 IL_4V9F_0874V9F0.20892Isolated non-canonical cWW with bulges0 LSU rRNAU2545U2546C2547*G2609U2610G2613cWWcWwcWW
3 IL_9H3G_1229H3G0.19792A LSU rRNAOMC2878PSU2879C2880*G2942PSU2943G2946cWWcWwcWW
4 IL_9PN5_1039PN50.20912A1 LSU rRNAC2879PSU2880C2881*G2943PSU2944G2947cWWcWwcWW
5 IL_8OI5_1088OI50.208621 LSU rRNAC2851U2852C2853*G2915U2916G2919cWWcWwcWW
6 IL_9AXU_0999AXU0.19282Isolated non-canonical cWW with bulges (H)2 LSU rRNAC2974U2975C2976*G3038U3039G3042cWWcWwcWW
7 IL_9E6Q_0899E6Q0.15642Isolated non-canonical cWW with bulges (H)1 LSU rRNAOMC2624PSU2625C2626*G2688U2689G2692cWWcWwcWW
8 IL_9DFE_0979DFE0.11232Isolated non-canonical cWW with bulges1A LSU rRNAC2510U2511C2512*G2574C2575G2578cWWncWWcWW
9 IL_8B0X_1558B0X0.00002a LSU rRNAC2514U2515C2516*G2578C2579G2582cWWncWWcWW
10 IL_4WF9_0954WF90.08862Isolated non-canonical cWW with bulgesX LSU rRNAC2537U2538C2539*G2601C2602G2605cWWncWWcWW
11 IL_7A0S_0897A0S0.13432Isolated non-canonical cWW with bulgesX LSU rRNAC2489U2490C2491*G2553C2554G2557cWWcWW
12 IL_4PKD_0014PKD0.17171Isolated non-canonical cWW with bulgesVU1 snRNA stem-loops 1 and 2 (55-MER)G106U107U108*A86U87C89cWWcWwcWW
13 IL_5ML7_0105ML70.33981Isolated non-canonical cWW with bulgesB23S ribosomal RNAU2181A2182C2183*G2196C2197A2199cWWcWWcWW
14 IL_9NLN_0079NLN0.30181CRNA (CVB3 IRES Domain V)C41A42C43*G59C60G62cWWcWWcWW
15 IL_4V9F_0974V9F0.34181Isolated non-canonical cWW with bulges0 LSU rRNAG2855A2856C2857*G2900C2901C2903cWWncWWcWW
16 IL_7A0S_1127A0S0.39601Isolated non-canonical cWW with bulgesY 5S rRNAC19A20C21*G66C67G69ncWWncWWncWW
17 IL_8GLP_1878GLP0.45381Isolated non-canonical cWW pair (H)L8 5.8S rRNAU64A65A66*U92C93A95cWWncWWcWW
18 IL_9PN5_1409PN50.53861A4 5.8S rRNAU64A65A66*U93C94A96cWWncWScWW
19 IL_8OI5_1418OI50.553314 5.8S rRNAU64A65A66*U93C94A96cWWncWWncWW
20 IL_9AXU_1339AXU0.56891Isolated non-canonical cWW pair (H)4 5.8S rRNAU72A73A74*U101C102A104cWWncWWncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUC*GCGAG4
UAA*UCGA4
(OMC)(PSU)C*G(PSU)G(A2M)G2
CUC*GUGAG2
CAC*GCAG2
UUC*GUGAG1
C(PSU)C*G(PSU)GAG1
(OMC)(PSU)C*GUG(A2M)G1
GUU*AUAC1
UAC*GCCA1
GAC*GCAC1
Non-Watson-Crick part of the motif
SequenceCounts
U*CGA4
A*CG4
U*UGA3
A*CA3
(PSU)*(PSU)G(A2M)2
(PSU)*(PSU)GA1
(PSU)*UG(A2M)1
U*UA1
A*CC1

Release history

Release4.104.114.12
Date2026-05-202026-06-172026-07-15
StatusNew id, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW with bulges (8)
  • (8)
  • Isolated non-canonical cWW pair (H) (2)
  • Isolated non-canonical cWW with bulges (H) (2)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.05 | Avg 0.36 | Max 0.88
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