IL_1KD1_019
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- ACGAAU*AGACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KD1_019 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.0407
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_67427.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
1KD1|1|A|A|562
1KD1|1|A|C|563
1KD1|1|A|G|564
1KD1|1|A|A|565
1KD1|1|A|A|566
1KD1|1|A|U|567
*
1KD1|1|A|A|591
1KD1|1|A|G|592
1KD1|1|A|A|593
1KD1|1|A|C|594
1KD1|1|A|U|595
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain X
- RIBOSOMAL PROTEIN L30
- Chain Z
- RIBOSOMAL PROTEIN L32E
Coloring options: