IL_1KD1_020
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGACCG*CCAGUAA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KD1_020 not in the Motif Atlas
- Homologous match to IL_4V9F_019
- Geometric discrepancy: 0.0445
- The information below is about IL_4V9F_019
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.6
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
1KD1|1|A|U|567
1KD1|1|A|G|568
1KD1|1|A|A|569
1KD1|1|A|C|570
1KD1|1|A|C|571
1KD1|1|A|G|572
*
1KD1|1|A|C|585
1KD1|1|A|C|586
1KD1|1|A|A|587
1KD1|1|A|G|588
1KD1|1|A|U|589
1KD1|1|A|A|590
1KD1|1|A|A|591
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain X
- RIBOSOMAL PROTEIN L30
Coloring options: