IL_1KD1_032
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CCGAG*CGUUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 1KD1|1|A|U|1029, 1KD1|1|A|U|1030
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KD1_032 not in the Motif Atlas
- Homologous match to IL_4V9F_031
- Geometric discrepancy: 0.031
- The information below is about IL_4V9F_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
1KD1|1|A|C|936
1KD1|1|A|C|937
1KD1|1|A|G|938
1KD1|1|A|A|939
1KD1|1|A|G|940
*
1KD1|1|A|C|1026
1KD1|1|A|G|1027
1KD1|1|A|U|1028
1KD1|1|A|U|1029
1KD1|1|A|U|1030
1KD1|1|A|G|1031
1KD1|1|A|A|1032
1KD1|1|A|C|1033
1KD1|1|A|G|1034
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain P
- RIBOSOMAL PROTEIN L18E
- Chain R
- RIBOSOMAL PROTEIN L21E
- Chain X
- RIBOSOMAL PROTEIN L30
Coloring options: