IL_1KD1_036
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCGACCG*CAAAC
- Length
- 12 nucleotides
- Bulged bases
- 1KD1|1|A|G|960
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KD1_036 not in the Motif Atlas
- Homologous match to IL_4V9F_035
- Geometric discrepancy: 0.0341
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
1KD1|1|A|G|958
1KD1|1|A|C|959
1KD1|1|A|G|960
1KD1|1|A|A|961
1KD1|1|A|C|962
1KD1|1|A|C|963
1KD1|1|A|G|964
*
1KD1|1|A|C|1004
1KD1|1|A|A|1005
1KD1|1|A|A|1006
1KD1|1|A|A|1007
1KD1|1|A|C|1008
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain J
- RIBOSOMAL PROTEIN L10E
- Chain O
- RIBOSOMAL PROTEIN L18
- Chain R
- RIBOSOMAL PROTEIN L21E
Coloring options: