Motif IL_38603.1 Version IL_38603.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-3 | 1-11 | 2-4 | 2-5 | 2-8 | 2-10 | 3-11 | 4-11 | 5-8 | 5-10 | 6-7 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_035 | 4V9F | 0.0000 | 1 | 0 | LSU rRNA | G | 958 | C | 959 | A | 961 | C | 962 | C | 963 | G | 964 | * | C | 1004 | A | 1005 | A | 1006 | A | 1007 | C | 1008 | tSW | cWW | cSH | ntSW | tWH | cWS | cWW | cWW | ||||
| 2 | IL_8B0X_050 | 8B0X | 0.9314 | 0 | A | SSU rRNA | G | 1144 | A | 1145 | A | 1146 | C | 1147 | U | 1148 | C | 1149 | * | G | 1124 | U | 1125 | U | 1126 | G | 1127 | C | 1128 | cWW | cWW | ntHS | cWS | tHS | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGACCG*CAAAC | 1 |
| GAACUC*GUUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGACC*AAA | 1 |
| AACU*UUG | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Heat map statistics
- Min 0.93 | Avg 0.47 | Max 0.93
Coloring options: