IL_1KD1_041
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUAAGUG*CUCAAA
- Length
- 13 nucleotides
- Bulged bases
- 1KD1|1|A|C|1245, 1KD1|1|A|A|1247
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KD1_041 not in the Motif Atlas
- Homologous match to IL_4V9F_040
- Geometric discrepancy: 0.1454
- The information below is about IL_4V9F_040
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
1KD1|1|A|U|1115
1KD1|1|A|U|1116
1KD1|1|A|A|1117
1KD1|1|A|A|1118
1KD1|1|A|G|1119
1KD1|1|A|U|1120
1KD1|1|A|G|1121
*
1KD1|1|A|C|1243
1KD1|1|A|U|1244
1KD1|1|A|C|1245
1KD1|1|A|A|1246
1KD1|1|A|A|1247
1KD1|1|A|A|1248
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain G
- RIBOSOMAL PROTEIN L6
- Chain K
- RIBOSOMAL PROTEIN L13
Coloring options: