IL_1KD1_043
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CCUAGACAG*CCGAG
- Length
- 14 nucleotides
- Bulged bases
- 1KD1|1|A|A|1150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KD1_043 not in the Motif Atlas
- Homologous match to IL_4V9F_042
- Geometric discrepancy: 0.0427
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
1KD1|1|A|C|1147
1KD1|1|A|C|1148
1KD1|1|A|U|1149
1KD1|1|A|A|1150
1KD1|1|A|G|1151
1KD1|1|A|A|1152
1KD1|1|A|C|1153
1KD1|1|A|A|1154
1KD1|1|A|G|1155
*
1KD1|1|A|C|1212
1KD1|1|A|C|1213
1KD1|1|A|G|1214
1KD1|1|A|A|1215
1KD1|1|A|G|1216
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain G
- RIBOSOMAL PROTEIN L6
- Chain I
- RIBOSOMAL PROTEIN L10
Coloring options: