IL_1KD1_051

3D structure

PDB id

1KD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCACU*AGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KD1_051 not in the Motif Atlas

Homologous match to IL_4V9F_051

Geometric discrepancy: 0.0721

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

1KD1|1|A|G|1425
1KD1|1|A|C|1426
1KD1|1|A|A|1427
1KD1|1|A|C|1428
1KD1|1|A|U|1429
*
1KD1|1|A|A|1437
1KD1|1|A|G|1438
1KD1|1|A|C|1439

Current chains

Chain A

23S RRNA

Nearby chains

Chain 3

RIBOSOMAL PROTEIN L39E

Chain Q

RIBOSOMAL PROTEIN L19E

Chain S

RIBOSOMAL PROTEIN L22