IL_1KD1_054

3D structure

PDB id

1KD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGUGAAAG*CGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KD1_054 not in the Motif Atlas

Homologous match to IL_4V9F_054

Geometric discrepancy: 0.158

The information below is about IL_4V9F_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41853.1

Basepair signature

cWW-L-tHH-L-tHS-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

1KD1|1|A|C|1521
1KD1|1|A|A|1522
1KD1|1|A|G|1523
1KD1|1|A|U|1524
1KD1|1|A|G|1525
1KD1|1|A|A|1526
1KD1|1|A|A|1527
1KD1|1|A|A|1528
1KD1|1|A|G|1529
*
1KD1|1|A|C|1662
1KD1|1|A|G|1663
1KD1|1|A|A|1664
1KD1|1|A|G|1665

Current chains

Chain A

23S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L2