IL_1KD1_065
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGCAAAU*ACUCGUACG
- Length
- 16 nucleotides
- Bulged bases
- 1KD1|1|A|A|1857, 1KD1|1|A|C|1872, 1KD1|1|A|C|1876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KD1_065 not in the Motif Atlas
- Homologous match to IL_4V9F_065
- Geometric discrepancy: 0.0285
- The information below is about IL_4V9F_065
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
1KD1|1|A|C|1854
1KD1|1|A|G|1855
1KD1|1|A|C|1856
1KD1|1|A|A|1857
1KD1|1|A|A|1858
1KD1|1|A|A|1859
1KD1|1|A|U|1860
*
1KD1|1|A|A|1869
1KD1|1|A|C|1870
1KD1|1|A|U|1871
1KD1|1|A|C|1872
1KD1|1|A|G|1873
1KD1|1|A|U|1874
1KD1|1|A|A|1875
1KD1|1|A|C|1876
1KD1|1|A|G|1877
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 1
- RIBOSOMAL PROTEIN L37Ae
- Chain C
- RIBOSOMAL PROTEIN L2
Coloring options: