IL_1KD1_071

3D structure

PDB id

1KD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

1KD1|1|A|G|1979, 1KD1|1|A|U|1985, 1KD1|1|A|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KD1_071 not in the Motif Atlas

Homologous match to IL_4V9F_071

Geometric discrepancy: 0.0353

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1KD1|1|A|C|1975
1KD1|1|A|G|1976
1KD1|1|A|U|1977
1KD1|1|A|A|1978
1KD1|1|A|G|1979
1KD1|1|A|U|1980
1KD1|1|A|A|1981
1KD1|1|A|C|1982
1KD1|1|A|C|1983
1KD1|1|A|U|1984
1KD1|1|A|U|1985
1KD1|1|A|G|1986
*
1KD1|1|A|C|2002
1KD1|1|A|U|2003
1KD1|1|A|U|2004
1KD1|1|A|G|2005

Current chains

Chain A

23S RRNA

Nearby chains