IL_1KD1_100
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGUUGCCU*AUAAGC
- Length
- 14 nucleotides
- Bulged bases
- 1KD1|1|B|U|3023
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KD1_100 not in the Motif Atlas
- Homologous match to IL_4V9F_102
- Geometric discrepancy: 0.2615
- The information below is about IL_4V9F_102
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_67623.1
- Basepair signature
- cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
1KD1|1|B|G|3021
1KD1|1|B|G|3022
1KD1|1|B|U|3023
1KD1|1|B|U|3024
1KD1|1|B|G|3025
1KD1|1|B|C|3026
1KD1|1|B|C|3027
1KD1|1|B|U|3028
*
1KD1|1|B|A|3054
1KD1|1|B|U|3055
1KD1|1|B|A|3056
1KD1|1|B|A|3057
1KD1|1|B|G|3058
1KD1|1|B|C|3059
Current chains
- Chain B
- 5S RRNA
Nearby chains
- Chain F
- RIBOSOMAL PROTEIN L5
- Chain O
- RIBOSOMAL PROTEIN L18
Coloring options: