IL_1KP7_001

3D structure

PDB id

1KP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conserved RNA Structure within the HCV IRES eIF3 Binding Site

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GCU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KP7_001 not in the Motif Atlas

Geometric match to IL_5VCI_002

Geometric discrepancy: 0.1864

The information below is about IL_5VCI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

1KP7|1|A|G|4
1KP7|1|A|C|5
1KP7|1|A|U|6
*
1KP7|1|A|A|25
1KP7|1|A|C|26
1KP7|1|A|C|27

Current chains

Chain A

Hepatitis C Virus Internal Ribosome Entry Site Fragment

Nearby chains