IL_1KQS_013

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_013 not in the Motif Atlas

Geometric match to IL_4V9F_012

Geometric discrepancy: 0.0399

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1KQS|1|0|C|290
1KQS|1|0|C|291
1KQS|1|0|G|292
1KQS|1|0|A|293
1KQS|1|0|C|294
1KQS|1|0|C|295
1KQS|1|0|G|296
*
1KQS|1|0|C|355
1KQS|1|0|C|356
1KQS|1|0|A|357
1KQS|1|0|G|358
1KQS|1|0|U|359
1KQS|1|0|A|360
1KQS|1|0|C|361
1KQS|1|0|G|362

Current chains

Chain 0

23S RRNA

Nearby chains