IL_1KQS_020

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_020 not in the Motif Atlas

Homologous match to IL_4V9F_019

Geometric discrepancy: 0.0456

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1KQS|1|0|U|567
1KQS|1|0|G|568
1KQS|1|0|A|569
1KQS|1|0|C|570
1KQS|1|0|C|571
1KQS|1|0|G|572
*
1KQS|1|0|C|585
1KQS|1|0|C|586
1KQS|1|0|A|587
1KQS|1|0|G|588
1KQS|1|0|U|589
1KQS|1|0|A|590
1KQS|1|0|A|591

Current chains

Chain 0

23S RRNA

Nearby chains

Chain V

RIBOSOMAL PROTEIN L30