IL_1KQS_023

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAG*CGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_023 not in the Motif Atlas

Homologous match to IL_4V9F_022

Geometric discrepancy: 0.0373

The information below is about IL_4V9F_022

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

1KQS|1|0|C|705
1KQS|1|0|G|706
1KQS|1|0|C|707
1KQS|1|0|A|708
1KQS|1|0|G|709
*
1KQS|1|0|C|719
1KQS|1|0|G|720
1KQS|1|0|A|721
1KQS|1|0|G|722
1KQS|1|0|G|723

Current chains

Chain 0

23S RRNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN L18E