IL_1KQS_032

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGAGG*CCGUUUGACG

Length

16 nucleotides

Bulged bases

1KQS|1|0|U|1029, 1KQS|1|0|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_032 not in the Motif Atlas

Geometric match to IL_6HCT_001

Geometric discrepancy: 0.3954

The information below is about IL_6HCT_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_74205.1

Basepair signature

cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

Number of instances in this motif group

3

Unit IDs

1KQS|1|0|C|936
1KQS|1|0|C|937
1KQS|1|0|G|938
1KQS|1|0|A|939
1KQS|1|0|G|940
1KQS|1|0|G|941
*
1KQS|1|0|C|1025
1KQS|1|0|C|1026
1KQS|1|0|G|1027
1KQS|1|0|U|1028
1KQS|1|0|U|1029
1KQS|1|0|U|1030
1KQS|1|0|G|1031
1KQS|1|0|A|1032
1KQS|1|0|C|1033
1KQS|1|0|G|1034

Current chains

Chain 0

23S RRNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN L18E

Chain P

RIBOSOMAL PROTEIN L21E

Chain V

RIBOSOMAL PROTEIN L30