IL_1KQS_059

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGCAAC*GGC

Length

10 nucleotides

Bulged bases

1KQS|1|0|G|1730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_059 not in the Motif Atlas

Homologous match to IL_4V9F_059

Geometric discrepancy: 0.0356

The information below is about IL_4V9F_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

1KQS|1|0|G|1728
1KQS|1|0|A|1729
1KQS|1|0|G|1730
1KQS|1|0|C|1731
1KQS|1|0|A|1732
1KQS|1|0|A|1733
1KQS|1|0|C|1734
*
1KQS|1|0|G|2045
1KQS|1|0|G|2046
1KQS|1|0|C|2047

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain Q

RIBOSOMAL PROTEIN L22

Chain W

RIBOSOMAL PROTEIN L31E