IL_1KQS_063

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUACC*GAAGAAG

Length

13 nucleotides

Bulged bases

1KQS|1|0|G|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_063 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0369

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

1KQS|1|0|C|1764
1KQS|1|0|G|1765
1KQS|1|0|U|1766
1KQS|1|0|A|1767
1KQS|1|0|C|1768
1KQS|1|0|C|1769
*
1KQS|1|0|G|1774
1KQS|1|0|A|1775
1KQS|1|0|A|1776
1KQS|1|0|G|1777
1KQS|1|0|A|1778
1KQS|1|0|A|1779
1KQS|1|0|G|1780

Current chains

Chain 0

23S RRNA

Nearby chains

Chain O

RIBOSOMAL PROTEIN L19E

Chain Y

RIBOSOMAL PROTEIN L37Ae