IL_1KQS_065

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

1KQS|1|0|A|1857, 1KQS|1|0|C|1872, 1KQS|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_065 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.0277

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1KQS|1|0|C|1854
1KQS|1|0|G|1855
1KQS|1|0|C|1856
1KQS|1|0|A|1857
1KQS|1|0|A|1858
1KQS|1|0|A|1859
1KQS|1|0|U|1860
*
1KQS|1|0|A|1869
1KQS|1|0|C|1870
1KQS|1|0|U|1871
1KQS|1|0|C|1872
1KQS|1|0|G|1873
1KQS|1|0|U|1874
1KQS|1|0|A|1875
1KQS|1|0|C|1876
1KQS|1|0|G|1877

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2

Chain Y

RIBOSOMAL PROTEIN L37Ae