IL_1KQS_069

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAACAC*GACGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_069 not in the Motif Atlas

Homologous match to IL_4V9F_069

Geometric discrepancy: 0.1056

The information below is about IL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88116.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

1KQS|1|0|U|1907
1KQS|1|0|G|1908
1KQS|1|0|A|1909
1KQS|1|0|A|1910
1KQS|1|0|C|1911
1KQS|1|0|A|1912
1KQS|1|0|C|1913
*
1KQS|1|0|G|1926
1KQS|1|0|A|1927
1KQS|1|0|C|1928
1KQS|1|0|G|1929
1KQS|1|0|A|1930
1KQS|1|0|A|1931
1KQS|1|0|G|1932

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L44E

Chain A

RIBOSOMAL PROTEIN L2