IL_1KQS_097

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGUGCG*UUAAG

Length

11 nucleotides

Bulged bases

1KQS|1|0|A|2890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KQS_097 not in the Motif Atlas

Homologous match to IL_4V9F_099

Geometric discrepancy: 0.0469

The information below is about IL_4V9F_099

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

1KQS|1|0|U|2864
1KQS|1|0|G|2865
1KQS|1|0|U|2866
1KQS|1|0|G|2867
1KQS|1|0|C|2868
1KQS|1|0|G|2869
*
1KQS|1|0|U|2888
1KQS|1|0|U|2889
1KQS|1|0|A|2890
1KQS|1|0|A|2891
1KQS|1|0|G|2892

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain T

RIBOSOMAL PROTEIN L24E