IL_1KQS_100
3D structure
- PDB id
- 1KQS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUGCCU*AUAAGC
- Length
- 14 nucleotides
- Bulged bases
- 1KQS|1|9|U|3023
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KQS_100 not in the Motif Atlas
- Homologous match to IL_4V9F_102
- Geometric discrepancy: 0.2645
- The information below is about IL_4V9F_102
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_67623.1
- Basepair signature
- cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
1KQS|1|9|G|3021
1KQS|1|9|G|3022
1KQS|1|9|U|3023
1KQS|1|9|U|3024
1KQS|1|9|G|3025
1KQS|1|9|C|3026
1KQS|1|9|C|3027
1KQS|1|9|U|3028
*
1KQS|1|9|A|3054
1KQS|1|9|U|3055
1KQS|1|9|A|3056
1KQS|1|9|A|3057
1KQS|1|9|G|3058
1KQS|1|9|C|3059
Current chains
- Chain 9
- 5S RRNA
Nearby chains
- Chain D
- RIBOSOMAL PROTEIN L5
- Chain M
- RIBOSOMAL PROTEIN L18
Coloring options: