IL_1KUO_001

3D structure

PDB id

1KUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ms2-RNA Hairpin (C-10) Complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

1KUO|1|R|C|6||||P_1

QA status

Incomplete nucleotides: 5, 6, 7, 14, 15

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KUO_001 not in the Motif Atlas

Geometric match to IL_1DQF_001

Geometric discrepancy: 0.3029

The information below is about IL_1DQF_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

1KUO|1|R|G|5||||P_1
1KUO|1|R|C|6||||P_1
1KUO|1|R|G|7||||P_1
*
1KUO|1|R|C|14||||P_1
1KUO|1|R|C|15||||P_1

Current chains

Chain R

5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3'

Nearby chains

Chain A

COAT PROTEIN MS2