IL_1L1W_001

3D structure

PDB id

1L1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of a SRP19 binding domain in human SRP RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GACC*GACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1L1W_001 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.1305

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

1L1W|1|A|G|4
1L1W|1|A|A|5
1L1W|1|A|C|6
1L1W|1|A|C|7
*
1L1W|1|A|G|22
1L1W|1|A|A|23
1L1W|1|A|C|24
1L1W|1|A|C|25

Current chains

Chain A

SRP19 binding domain of SRP RNA

Nearby chains