IL_1LMV_002

3D structure

PDB id

1LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the unmodified U2 snRNA-intron branch site helix from S. cerevisiae

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1LMV_002 not in the Motif Atlas

Geometric match to IL_5J7L_249

Geometric discrepancy: 0.1842

The information below is about IL_5J7L_249

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

1LMV|2|A|U|5
1LMV|2|A|A|6
*
1LMV|2|B|U|4
1LMV|2|B|A|5
1LMV|2|B|A|6

Current chains

Chain A

5'-R(*GP*GP*UP*GP*UP*AP*GP*UP*A)-3'

Chain B

5'-R(*UP*AP*CP*UP*AP*AP*CP*AP*CP*C)-3'

Nearby chains