IL_90729.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5	1-5	3-4
1	IL_7A0S_024	7A0S	0.7006	0	90 degree turn	X	LSU rRNA	U	942	U	943	A	944	*	U	860	G	861	cWW	cWW
2	IL_5J7L_267	5J7L	0.7778	1	90 degree turn	DA	LSU rRNA	A	844	A	845\|\|A	U	847\|\|A	*	A	933	U	934	cWW	cWW
3	IL_6FZ0_001	6FZ0	0.3977	0	Single stack bend with SAM intercalation	A	SAM-V riboswitch	C	46	U	47	A	48	*	U	20	G	21	cWW	cWW
4	IL_2QWY_008	2QWY	0.4088	0	Single stack bend with SAM intercalation	C	SAM-II riboswitch	C	43	U	44	A	45	*	U	21	G	22	cWW	cWW
5	IL_3MOJ_004	3MOJ	0.4225	0	Single stack bend	A	LSU rRNA	C	2540	A	2541	A	2542	*	U	2522	G	2523	cWW	cWW
6	IL_7A0S_022	7A0S	0.2644	0	Single stack bend	X	LSU rRNA	G	951	A	952	G	953	*	C	850	C	851	cWW	cWW
7	IL_4WF9_028	4WF9	0.2999	0	Single stack bend	X	LSU rRNA	G	984	A	985	G	986	*	C	882	C	883	cWW	cWW
8	IL_9DFE_022	9DFE	0.2533	0	Single stack bend	1A	LSU rRNA	G	940	A	941	G	942	*	C	837	C	838	cWW	cWW
9	IL_5J7L_266	5J7L	0.2404	0	Single stack bend	DA	LSU rRNA	G	940	A	941	G	942	*	C	837	C	838	cWW	ncWW
10	IL_8P9A_233	8P9A	0.1984	0	Single stack bend	AR	LSU rRNA	G	56	A	57	G	58	*	C	27	C	28	cWW	cWW
11	IL_8CRE_004	8CRE	0.1671	0	Single stack bend	1	LSU rRNA	G	55	A	56	G	57	*	C	26	C	27	cWW	cWW
12	IL_4V9F_005	4V9F	0.2036	0	Single stack bend	0	LSU rRNA	G	182	A	183	G	184	*	C	153	C	154	cWW	cWW
13	IL_7QR8_009	7QR8	0.2120	0	Single stack bend	A+C	tracrRNA + PTPRC off-target1 target strand	C	14	U	15	A	16	*	DT	5	DG	6	cWW	cWW
14	IL_7MLX_001	7MLX	0.1290	0	Single stack bend	R	RNA (65-MER)	G	48	A	49	U	50	*	A	37	C	38	cWW	cWW
15	IL_9DFE_005	9DFE	0.1284	0	Single stack bend	1A	LSU rRNA	G	212	A	213	G	214	*	C	183	C	184	cWW	cWW
16	IL_4WF9_007	4WF9	0.0000	0	Single stack bend	X	LSU rRNA	G	215	A	216	G	217	*	C	186	C	187	cWW	cWW
17	IL_5J7L_249	5J7L	0.1261	0	Single stack bend	DA	LSU rRNA	G	212	A	213	G	214	*	C	183	C	184	cWW	cWW
18	IL_7A0S_005	7A0S	0.1476	0	Single stack bend	X	LSU rRNA	A	189	A	190	G	191	*	C	160	U	161	cWW	cWW
19	IL_8P9A_298	8P9A	0.2258	0	Single stack bend	AR	LSU rRNA	G	1776	U	1777	G	1778	*	C	1670	C	1671	cWW	cWW
20	IL_8CRE_075	8CRE	0.2087	0	Single stack bend	1	LSU rRNA	G	1772	U	1773	G	1774	*	C	1666	C	1667	cWW	cWW
21	IL_4C7O_002	4C7O	0.2967	0	Single stack bend	E	SRP RNA	A	36	U	37	G	38	*	C	8	U	9	cWW	cWW
22	IL_8CRE_012	8CRE	0.2661	0	Single stack bend	1	LSU rRNA	A	236	U	237	G	238	*	C	177	U	178	cWW	cWW
23	IL_7KGA_003	7KGA	0.2672	0	Single stack bend	A	Flavivirus DB element	A	37	C	38	U	39	*	A	15	U	16	cWW	cWW
24	IL_8P9A_367	8P9A	0.2964	0	Single stack bend	AS	5S rRNA	C	47	U	48	G	49	*	C	29	G	30	cWW	cWW
25	IL_8OI5_137	8OI5	0.2783	0	Single stack bend	3	5S rRNA	C	47	C	48	G	49	*	C	29	G	30	cWW	cWW
26	IL_8P9A_238	8P9A	0.2588	0	Single stack bend	AR	LSU rRNA	C	163	A	164	A	165	*	U	257	G	258	cWW	cWW
27	IL_5IBB_340	5IBB	0.2997	0	Single base bend	1L	tRNA	G	63	U	64	C	65	*	G	50	C	51	cWW	cWW
28	IL_4LFB_041	4LFB	0.3157	0	Single stack bend	A	SSU rRNA	G	1002	G	1003	G	1003\|\|\|A	*	C	1038	C	1039	cWW	cWW
29	IL_8P9A_328	8P9A	0.3387	1	Single stack bend	AR	LSU rRNA	G	2770	U	2771	C	2773	*	G	2787	C	2788	cWW	cWW
30	IL_4V83_236	4V83	0.4178	0	Single stack bend	CV	domain 3 of PSIC IGR IRES RNA	C	6155	A	6156	A	6157	*	U	6172	G	6173	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAG*CC	10
CAA*UG	3
CUA*UG	2
GUG*CC	2
AUG*CU	2
UUA*UG	1
AU*AAUU	1
CUA*TG	1
GAU*AC	1
AAG*CU	1
ACU*AU	1
CUG*CG	1
CCG*CG	1
GUC*GC	1
GGG*CC	1
GUCC*GC	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	15
U*	10
C*	2
*AU	1
G*	1
UC*	1

Release history

Release	3.95	3.96	3.97	3.98	3.99
Date	2025-03-26	2025-04-23	2025-05-21	2025-06-18	2025-07-16
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_90729.1 Version IL_90729.1 of this group appears in releases 3.95 to 3.99 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_90729.1 Version IL_90729.1 of this group appears in releases 3.95 to 3.99

Download

Csv

Json