IL_1LNT_001
3D structure
- PDB id
- 1LNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the Highly Conserved RNA Internal Loop of SRP
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.7 Å
Loop
- Sequence
- CGU*G(CBV)G
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1LNT_001 not in the Motif Atlas
- Geometric match to IL_4KR9_001
- Geometric discrepancy: 0.1259
- The information below is about IL_4KR9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
1LNT|1|A|C|2
1LNT|1|A|G|3
1LNT|1|A|U|4
*
1LNT|1|B|G|21
1LNT|1|B|CBV|22
1LNT|1|B|G|23
Current chains
- Chain A
- 5'-R(*GP*CP*GP*UP*CP*AP*GP*GP*UP*CP*(CBV)P*G)-3'
- Chain B
- 5'-R(*CP*GP*GP*AP*AP*GP*CP*AP*GP*(CBV)P*GP*C)-3'
Nearby chains
No other chains within 10ÅColoring options: