IL_1LUU_008

3D structure

PDB id

1LUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 4 MODIFICATIONS (OMC32 OMG34 1MG37 5MC40)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AGA*U(5MC)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1LUU_008 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1352

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

1LUU|8|A|A|29
1LUU|8|A|G|30
1LUU|8|A|A|31
*
1LUU|8|A|U|39
1LUU|8|A|5MC|40
1LUU|8|A|U|41

Current chains

Chain A

5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*(1MG)P*AP*UP*(5MC)P*UP*GP*G)-3'

Nearby chains