IL_1M1K_013

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M1K_013 not in the Motif Atlas

Geometric match to IL_4V9F_012

Geometric discrepancy: 0.0433

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1M1K|1|A|C|290
1M1K|1|A|C|291
1M1K|1|A|G|292
1M1K|1|A|A|293
1M1K|1|A|C|294
1M1K|1|A|C|295
1M1K|1|A|G|296
*
1M1K|1|A|C|355
1M1K|1|A|C|356
1M1K|1|A|A|357
1M1K|1|A|G|358
1M1K|1|A|U|359
1M1K|1|A|A|360
1M1K|1|A|C|361
1M1K|1|A|G|362

Current chains

Chain A

23S RRNA

Nearby chains