IL_1M1K_019
3D structure
- PDB id
- 1M1K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- ACGAAU*AGACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1M1K_019 not in the Motif Atlas
- Homologous match to IL_4V9F_018
- Geometric discrepancy: 0.0408
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_97631.1
- Basepair signature
- cWW-L-R-L-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
1M1K|1|A|A|562
1M1K|1|A|C|563
1M1K|1|A|G|564
1M1K|1|A|A|565
1M1K|1|A|A|566
1M1K|1|A|U|567
*
1M1K|1|A|A|591
1M1K|1|A|G|592
1M1K|1|A|A|593
1M1K|1|A|C|594
1M1K|1|A|U|595
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain X
- RIBOSOMAL PROTEIN L30
- Chain Z
- RIBOSOMAL PROTEIN L32E
Coloring options: