IL_1M1K_041

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

1M1K|1|A|C|1245, 1M1K|1|A|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M1K_041 not in the Motif Atlas

Homologous match to IL_4V9F_040

Geometric discrepancy: 0.1451

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

1M1K|1|A|U|1115
1M1K|1|A|U|1116
1M1K|1|A|A|1117
1M1K|1|A|A|1118
1M1K|1|A|G|1119
1M1K|1|A|U|1120
1M1K|1|A|G|1121
*
1M1K|1|A|C|1243
1M1K|1|A|U|1244
1M1K|1|A|C|1245
1M1K|1|A|A|1246
1M1K|1|A|A|1247
1M1K|1|A|A|1248

Current chains

Chain A

23S RRNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN L6

Chain K

RIBOSOMAL PROTEIN L13