IL_1M1K_057

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAACU*ACGAACG

Length

13 nucleotides

Bulged bases

1M1K|1|A|C|1617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M1K_057 not in the Motif Atlas

Homologous match to IL_4V9F_057

Geometric discrepancy: 0.036

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1M1K|1|A|C|1578
1M1K|1|A|C|1579
1M1K|1|A|A|1580
1M1K|1|A|A|1581
1M1K|1|A|C|1582
1M1K|1|A|U|1583
*
1M1K|1|A|A|1612
1M1K|1|A|C|1613
1M1K|1|A|G|1614
1M1K|1|A|A|1615
1M1K|1|A|A|1616
1M1K|1|A|C|1617
1M1K|1|A|G|1618

Current chains

Chain A

23S RRNA

Nearby chains