IL_1M1K_058

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGGAAG*CAGGAAG

Length

13 nucleotides

Bulged bases

1M1K|1|A|G|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M1K_058 not in the Motif Atlas

Homologous match to IL_4V9F_058

Geometric discrepancy: 0.051

The information below is about IL_4V9F_058

Detailed Annotation

Kink-turn

Broad Annotation

Kink-turn

Motif group

IL_32016.1

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

1M1K|1|A|U|1587
1M1K|1|A|G|1588
1M1K|1|A|G|1589
1M1K|1|A|A|1590
1M1K|1|A|A|1591
1M1K|1|A|G|1592
*
1M1K|1|A|C|1602
1M1K|1|A|A|1603
1M1K|1|A|G|1604
1M1K|1|A|G|1605
1M1K|1|A|A|1606
1M1K|1|A|A|1607
1M1K|1|A|G|1608

Current chains

Chain A

23S RRNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L37Ae

Chain Q

RIBOSOMAL PROTEIN L19E