IL_1M1K_059

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGCAAC*GGC

Length

10 nucleotides

Bulged bases

1M1K|1|A|G|1730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M1K_059 not in the Motif Atlas

Homologous match to IL_4V9F_059

Geometric discrepancy: 0.0467

The information below is about IL_4V9F_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

1M1K|1|A|G|1728
1M1K|1|A|A|1729
1M1K|1|A|G|1730
1M1K|1|A|C|1731
1M1K|1|A|A|1732
1M1K|1|A|A|1733
1M1K|1|A|C|1734
*
1M1K|1|A|G|2045
1M1K|1|A|G|2046
1M1K|1|A|C|2047

Current chains

Chain A

23S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN L3

Chain S

RIBOSOMAL PROTEIN L22

Chain Y

RIBOSOMAL PROTEIN L31E