IL_1M1K_062

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUUCGG*CUGU

Length

10 nucleotides

Bulged bases

1M1K|1|A|G|2033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M1K_062 not in the Motif Atlas

Homologous match to IL_4V9F_062

Geometric discrepancy: 0.0433

The information below is about IL_4V9F_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

1M1K|1|A|A|1747
1M1K|1|A|U|1748
1M1K|1|A|U|1749
1M1K|1|A|C|1750
1M1K|1|A|G|1751
1M1K|1|A|G|1752
*
1M1K|1|A|C|2031
1M1K|1|A|U|2032
1M1K|1|A|G|2033
1M1K|1|A|U|2034

Current chains

Chain A

23S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN L3

Chain L

RIBOSOMAL PROTEIN L14