Motif IL_28217.1 Version IL_28217.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-9 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_062 | 7A0S | 0.1544 | 1 | Intercalated tWH | X | LSU rRNA | A | 1686 | C | 1687 | U | 1688 | U | 1689 | U | 1690 | G | 1691 | * | C | 1973 | U | 1974 | U | 1976 | cWW | cWW |
| 2 | IL_9DFE_067 | 9DFE | 0.1530 | 1 | 1A | LSU rRNA | A | 1669 | C | 1670 | U | 1671 | C | 1672 | U | 1673 | G | 1674 | * | C | 1990 | U | 1991 | U | 1993 | cWW | cWW | |
| 3 | IL_8B0X_126 | 8B0X | 0.1193 | 1 | Intercalated tWH (H) | a | LSU rRNA | A | 1671 | C | 1672 | U | 1673 | A | 1674 | G | 1675 | G | 1676 | * | C | 1994 | U | 1995 | U | 1997 | cWW | cWW |
| 4 | IL_4WF9_065 | 4WF9 | 0.1296 | 1 | Intercalated tWH | X | LSU rRNA | A | 1713 | C | 1714 | U | 1715 | C | 1716 | G | 1717 | G | 1718 | * | C | 2017 | U | 2018 | U | 2020 | cWW | cWW |
| 5 | IL_9E6Q_065 | 9E6Q | 0.0734 | 1 | Intercalated tWH (H) | 1 | LSU rRNA | A | 1813 | C | 1814 | U | 1815 | OMC | 1816 | G | 1817 | G | 1818 | * | C | 2111 | U | 2112 | U | 2114 | cWW | cWW |
| 6 | IL_4V9F_062 | 4V9F | 0.0753 | 1 | Intercalated tWH | 0 | LSU rRNA | A | 1747 | U | 1748 | U | 1749 | C | 1750 | G | 1751 | G | 1752 | * | C | 2031 | U | 2032 | U | 2034 | cWW | cWW |
| 7 | IL_9AXU_074 | 9AXU | 0.0355 | 1 | 2 | LSU rRNA | A | 1956 | G | 1957 | U | 1958 | C | 1959 | G | 1960 | G | 1961 | * | C | 2421 | U | 2422 | U | 2424 | cWW | cWW | |
| 8 | IL_8GLP_107 | 8GLP | 0.0000 | 1 | L5 | LSU rRNA | A | 2850 | G | 2851 | U | 2852 | C | 2853 | G | 2854 | G | 2855 | * | C | 3837 | U | 3838 | U | 3840 | cWW | cWW | |
| 9 | IL_8P9A_306 | 8P9A | 0.0632 | 1 | AR | LSU rRNA | A | 1901 | G | 1902 | U | 1903 | C | 1904 | G | 1905 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW | |
| 10 | IL_8OI5_080 | 8OI5 | 0.0784 | 1 | 1 | LSU rRNA | A | 1897 | G | 1898 | U | 1899 | C | 1900 | G | 1901 | G | 1902 | * | C | 2311 | U | 2312 | U | 2314 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUCGG*CUGU | 4 |
| ACUUUG*CUGU | 1 |
| ACUCUG*CUGU | 1 |
| ACUAGG*CUGU | 1 |
| ACUCGG*CUGU | 1 |
| ACU(OMC)GG*CUGU | 1 |
| AUUCGG*CUGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCG*UG | 4 |
| CUUU*UG | 1 |
| CUCU*UG | 1 |
| CUAG*UG | 1 |
| CUCG*UG | 1 |
| CU(OMC)G*UG | 1 |
| UUCG*UG | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Intercalated tWH (3)
- Intercalated tWH (H) (2)
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Heat map statistics
- Min 0.04 | Avg 0.10 | Max 0.19
Coloring options: