IL_1M5V_006

3D structure

PDB id

1M5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Transition State Stabilization by a Catalytic RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M5V_006 not in the Motif Atlas

Geometric match to IL_7ECO_005

Geometric discrepancy: 0.1928

The information below is about IL_7ECO_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

1M5V|1|E|G|72
1M5V|1|E|G|73
1M5V|1|E|G|74
*
1M5V|1|E|C|79
1M5V|1|E|U|80
1M5V|1|E|U|81

Current chains

Chain E

RNA HAIRPIN RIBOZYME

Nearby chains