IL_1M90_008

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M90_008 not in the Motif Atlas

Homologous match to IL_4V9F_008

Geometric discrepancy: 0.0365

The information below is about IL_4V9F_008

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

1M90|1|A|C|245
1M90|1|A|G|246
1M90|1|A|A|247
1M90|1|A|A|248
*
1M90|1|A|U|265
1M90|1|A|G|266

Current chains

Chain A

23S RRNA

Nearby chains

Chain H

RIBOSOMAL PROTEIN L7AE

Chain N

RIBOSOMAL PROTEIN L15E