IL_1M90_013
3D structure
- PDB id
- 1M90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CCGACCG*CCAGUACG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1M90_013 not in the Motif Atlas
- Homologous match to IL_4V9F_012
- Geometric discrepancy: 0.039
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
1M90|1|A|C|290
1M90|1|A|C|291
1M90|1|A|G|292
1M90|1|A|A|293
1M90|1|A|C|294
1M90|1|A|C|295
1M90|1|A|G|296
*
1M90|1|A|C|355
1M90|1|A|C|356
1M90|1|A|A|357
1M90|1|A|G|358
1M90|1|A|U|359
1M90|1|A|A|360
1M90|1|A|C|361
1M90|1|A|G|362
Current chains
- Chain A
- 23S RRNA
Nearby chains
No other chains within 10ÅColoring options: