3D structure

PDB id
1M90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CCGACCG*CCAGUACG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1M90_013 not in the Motif Atlas
Homologous match to IL_4V9F_012
Geometric discrepancy: 0.039
The information below is about IL_4V9F_012
Detailed Annotation
8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_59724.1
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
Number of instances in this motif group
1

Unit IDs

1M90|1|A|C|290
1M90|1|A|C|291
1M90|1|A|G|292
1M90|1|A|A|293
1M90|1|A|C|294
1M90|1|A|C|295
1M90|1|A|G|296
*
1M90|1|A|C|355
1M90|1|A|C|356
1M90|1|A|A|357
1M90|1|A|G|358
1M90|1|A|U|359
1M90|1|A|A|360
1M90|1|A|C|361
1M90|1|A|G|362

Current chains

Chain A
23S RRNA

Nearby chains

No other chains within 10Å

Coloring options:


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