3D structure

PDB id
1M90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GUG*CC
Length
5 nucleotides
Bulged bases
1M90|1|A|U|1109
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1M90_040 not in the Motif Atlas
Homologous match to IL_4V9F_039
Geometric discrepancy: 0.0411
The information below is about IL_4V9F_039
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

1M90|1|A|G|1108
1M90|1|A|U|1109
1M90|1|A|G|1110
*
1M90|1|A|C|1253
1M90|1|A|C|1254

Current chains

Chain A
23S RRNA

Nearby chains

Chain K
RIBOSOMAL PROTEIN L13
Chain X
RIBOSOMAL PROTEIN L30

Coloring options:


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