3D structure

PDB id
1M90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CCUAGACAG*CCGAG
Length
14 nucleotides
Bulged bases
1M90|1|A|A|1150
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1M90_043 not in the Motif Atlas
Homologous match to IL_4V9F_042
Geometric discrepancy: 0.0395
The information below is about IL_4V9F_042
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

1M90|1|A|C|1147
1M90|1|A|C|1148
1M90|1|A|U|1149
1M90|1|A|A|1150
1M90|1|A|G|1151
1M90|1|A|A|1152
1M90|1|A|C|1153
1M90|1|A|A|1154
1M90|1|A|G|1155
*
1M90|1|A|C|1212
1M90|1|A|C|1213
1M90|1|A|G|1214
1M90|1|A|A|1215
1M90|1|A|G|1216

Current chains

Chain A
23S RRNA

Nearby chains

Chain G
RIBOSOMAL PROTEIN L6
Chain I
RIBOSOMAL PROTEIN L10

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1542 s