3D structure

PDB id
1M90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CAGUGAAAG*CGAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1M90_054 not in the Motif Atlas
Homologous match to IL_4V9F_054
Geometric discrepancy: 0.1577
The information below is about IL_4V9F_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_41853.1
Basepair signature
cWW-L-tHH-L-tHS-L-cWW-L-L
Number of instances in this motif group
1

Unit IDs

1M90|1|A|C|1521
1M90|1|A|A|1522
1M90|1|A|G|1523
1M90|1|A|U|1524
1M90|1|A|G|1525
1M90|1|A|A|1526
1M90|1|A|A|1527
1M90|1|A|A|1528
1M90|1|A|G|1529
*
1M90|1|A|C|1662
1M90|1|A|G|1663
1M90|1|A|A|1664
1M90|1|A|G|1665

Current chains

Chain A
23S RRNA

Nearby chains

Chain C
RIBOSOMAL PROTEIN L2

Coloring options:


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