IL_1M90_071

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

1M90|1|A|G|1979, 1M90|1|A|U|1985, 1M90|1|A|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M90_071 not in the Motif Atlas

Homologous match to IL_4V9F_071

Geometric discrepancy: 0.0327

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1M90|1|A|C|1975
1M90|1|A|G|1976
1M90|1|A|U|1977
1M90|1|A|A|1978
1M90|1|A|G|1979
1M90|1|A|U|1980
1M90|1|A|A|1981
1M90|1|A|C|1982
1M90|1|A|C|1983
1M90|1|A|U|1984
1M90|1|A|U|1985
1M90|1|A|G|1986
*
1M90|1|A|C|2002
1M90|1|A|U|2003
1M90|1|A|U|2004
1M90|1|A|G|2005

Current chains

Chain A

23S RRNA

Nearby chains