IL_1M90_073

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AAG*CUAU

Length

7 nucleotides

Bulged bases

1M90|1|A|A|2096, 1M90|1|A|U|2648, 1M90|1|A|A|2649

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1M90_073 not in the Motif Atlas

Homologous match to IL_4V9F_073

Geometric discrepancy: 0.0497

The information below is about IL_4V9F_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

1M90|1|A|A|2095
1M90|1|A|A|2096
1M90|1|A|G|2097
*
1M90|1|A|C|2647
1M90|1|A|U|2648
1M90|1|A|A|2649
1M90|1|A|U|2650

Current chains

Chain A

23S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN L3

Chain S

RIBOSOMAL PROTEIN L22