Motif IL_80025.1 Version IL_80025.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_320 | 8P9A | 0.0623 | 2 | Major groove platform with intercalation (H) | AR | LSU rRNA | U | 2981 | A | 2982 | C | 2984 | * | G | 2396 | A | 2398 | cWW | cSH | cWW |
| 2 | IL_8OI5_094 | 8OI5 | 0.0430 | 2 | 1 | LSU rRNA | U | 2953 | A | 2954 | C | 2956 | * | G | 2374 | A | 2376 | cWW | cSH | cWW | |
| 3 | IL_8GLP_129 | 8GLP | 0.0000 | 2 | L5 | LSU rRNA | U | 4558 | A | 4559 | C | 4561 | * | G | 3900 | A | 3902 | cWW | cSH | cWW | |
| 4 | IL_9AXU_086 | 9AXU | 0.0946 | 2 | 2 | LSU rRNA | U | 3076 | A | 3077 | C | 3079 | * | G | 2484 | A | 2486 | cWW | cSH | cWW | |
| 5 | IL_9E6Q_076 | 9E6Q | 0.3840 | 2 | 1 | LSU rRNA | C | 2726 | A | 2728 | C | 2729 | * | G | 2174 | OMG | 2176 | cWW | cWW | ||
| 6 | IL_4V9F_073 | 4V9F | 0.4202 | 2 | 0 | LSU rRNA | C | 2647 | A | 2649 | U | 2650 | * | A | 2095 | G | 2097 | cWW | cWW | ||
| 7 | IL_4WF9_079 | 4WF9 | 0.4887 | 2 | X | LSU rRNA | C | 2639 | A | 2641 | U | 2642 | * | A | 2081 | G | 2083 | cWW | cWW | ||
| 8 | IL_8B0X_140 | 8B0X | 0.4765 | 2 | a | LSU rRNA | C | 2616 | A | 2618 | U | 2619 | * | A | 2058 | G | 2060 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UACC*GAA | 4 |
| CUAU*ACG | 2 |
| CUAC*GC(OMG) | 1 |
| CUAU*AAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AC*A | 4 |
| UA*C | 3 |
| UA*A | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Major groove platform with intercalation (H) (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.04 | Avg 0.27 | Max 0.49
Coloring options: