3D structure

PDB id
1M90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GGUAAG*CGAAAC
Length
12 nucleotides
Bulged bases
1M90|1|A|A|2800
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1M90_095 not in the Motif Atlas
Geometric match to IL_5J7L_350
Geometric discrepancy: 0.1682
The information below is about IL_5J7L_350
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

1M90|1|A|G|2772
1M90|1|A|G|2773
1M90|1|A|U|2774
1M90|1|A|A|2775
1M90|1|A|A|2776
1M90|1|A|G|2777
*
1M90|1|A|C|2797
1M90|1|A|G|2798
1M90|1|A|A|2799
1M90|1|A|A|2800
1M90|1|A|A|2801
1M90|1|A|C|2802

Current chains

Chain A
23S RRNA

Nearby chains

Chain G
RIBOSOMAL PROTEIN L6
Chain K
RIBOSOMAL PROTEIN L13

Coloring options:


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