IL_1MFQ_007

3D structure

PDB id

1MFQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Analysis of a Ternary S-Domain Complex of Human Signal Recognition Particle

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAGGU*GAGCAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

1MFQ|1|A|C|190
1MFQ|1|A|C|191
1MFQ|1|A|A|192
1MFQ|1|A|G|193
1MFQ|1|A|G|194
1MFQ|1|A|U|195
*
1MFQ|1|A|G|204
1MFQ|1|A|A|205
1MFQ|1|A|G|206
1MFQ|1|A|C|207
1MFQ|1|A|A|208
1MFQ|1|A|G|209

Current chains

Chain A

7S RNA of human SRP

Nearby chains

Chain B

signal recognition particle 19kDa protein

Chain C

signal recognition particle 54kDa protein